PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003051m
Common NameCARUB_v10003051mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-X1
Protein Properties Length: 881aa    MW: 98932.6 Da    PI: 8.317
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003051mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.5e-06247266120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      C +HkC ++CH G+CppC++
  Carubv10003051m 247 CNIHKCREICHDGECPPCRE 266
                      449***************85 PP
2zf-NF-X116.51.8e-05354373119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG H+C + CH+GpC + C+
  Carubv10003051m 354 CGYHRCPERCHRGPCLEtCR 373
                      *****************997 PP
3zf-NF-X118.73.9e-06428452119
         zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                      CG      +HkCq++CH GpC pCp
  Carubv10003051m 428 CGkrlrcrNHKCQSPCHQGPCAPCP 452
                      777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359084148IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.01E-4183231No hitNo description
SMARTSM004388.1195213IPR000967Zinc finger, NF-X1-type
PfamPF014222.5195212IPR000967Zinc finger, NF-X1-type
CDDcd060082.66E-9237285No hitNo description
SMARTSM004381.3E-4247266IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4247265IPR000967Zinc finger, NF-X1-type
CDDcd060089.24E-7290330No hitNo description
SMARTSM004380.038300319IPR000967Zinc finger, NF-X1-type
PfamPF014220.047300318IPR000967Zinc finger, NF-X1-type
CDDcd060083.98E-9344393No hitNo description
SMARTSM004380.035354374IPR000967Zinc finger, NF-X1-type
PfamPF014220.0013354373IPR000967Zinc finger, NF-X1-type
CDDcd060081.49E-6397445No hitNo description
SMARTSM004380.33407426IPR000967Zinc finger, NF-X1-type
PfamPF014220.036407425IPR000967Zinc finger, NF-X1-type
CDDcd060089.78E-11424472No hitNo description
PfamPF014226.1E-4428452IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034434453IPR000967Zinc finger, NF-X1-type
PfamPF01422180480491IPR000967Zinc finger, NF-X1-type
SMARTSM0043880491512IPR000967Zinc finger, NF-X1-type
PfamPF014224.8501511IPR000967Zinc finger, NF-X1-type
SMARTSM00438200520538IPR000967Zinc finger, NF-X1-type
PfamPF0142243520529IPR000967Zinc finger, NF-X1-type
SMARTSM004389.5602633IPR000967Zinc finger, NF-X1-type
PfamPF014220.078602613IPR000967Zinc finger, NF-X1-type
SMARTSM004380.053643661IPR000967Zinc finger, NF-X1-type
PfamPF014220.097644660IPR000967Zinc finger, NF-X1-type
SMARTSM004389.3706727IPR000967Zinc finger, NF-X1-type
PfamPF014222.9708720IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAGTAPTEFR WKPPPQPPPQ QQTFSESDSD SGSDSDNHQH RHNDVSSSIF KAYLDCHSSS  60
SPSSIDLAKI QSFLASSSSG AVSCLICLER IKRTDPTWSC TSLCFAVFHL FCIQSWARQC  120
LDLQAARAVT RPSSNPTEPE AVWNCPKCRS SYQKSKIPRR YLCYCGKEED PPADNPWILP  180
HSCGEVCERP LSSNCGHCCL LLCHPGPCAS CPKLVKAKCF CGGVEDVRRC GHKHFSCGDV  240
CDKVLDCNIH KCREICHDGE CPPCRERAIY KCCCGKVKEE KDCCERVFRC EASCENMLNC  300
GKHVCERGCH SGECGLCPYQ GKRSCPCGKR FYQGLSCDVV APLCGGTCDK VLGCGYHRCP  360
ERCHRGPCLE TCRIVVTKSC RCGGTKKQVP CHQELACERK CQRVRDCARH ACRRRCCDGE  420
CPPCSEICGK RLRCRNHKCQ SPCHQGPCAP CPIMVTISCA CGETHFEVPC GTETNQKPPR  480
CRKLCHITQL CRHGQNQKPH KCHYGACPPC RVLCDEEFPC GHKCTQRCHG PRPPPNREFM  540
IKPTKKMLNI QAESTPGSPC PLCPELVWKP CVGHHLAAEK MMVCSDRTEF ACDNLCGNPL  600
PCGNHYCSFT CHPLEIKNSS LDRRSESCEK CDLRCQKERT PRCQHPCPRR CHPGDCPPCK  660
TLVKRSCHCG TMVHAFECIY YNTLSEKEQT NARSCRGPCH RKLPNCTHLC PEICHPGQCP  720
LPEKCMKKVV ARCKCLTLKK EWLCQDVQAA HRATGSDPKE VPKNQFGVGL LPCDSNCKSK  780
LQMAESVLQQ RKVKEIEEKE EPSGKNASKR RKRRERGQDI KETTRLQKLA VATKRILMVV  840
MLMAMLAAVS YYGYKGLLWL SDWMNELEEQ RQKSRRYPRI *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003051m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286900.0AK228690.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-04-K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289514.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLR0FJ280.0R0FJ28_9BRAS; Uncharacterized protein
STRINGXP_006289514.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors