PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003054m
Common NameCARUB_v10003054mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 203aa    MW: 23855.4 Da    PI: 9.2168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003054mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.41e-30521853128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgk...rknra....tksgyWkat 86 
                      +GfrFhP+d+el+ +yL++kv++k+++  e  +++diy  ePw+L + +k+   e +ewy+F+++d+ +++ +   r++r+    t +g Wka 
  Carubv10003054m  52 VGFRFHPRDQELIRYYLEPKVAKKQNKYVELEDKTDIYAKEPWRLTH-TKSdlfEPNEWYYFVTHDQVSENVTgklRNSRKvkgeTCEGCWKAP 144
                      7************************9998878888**********83.233345778*********999854422355554445577******* PP

              NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k ++v+sk ++e++g k++L fy   + +++++ W+m ey l
  Carubv10003054m 145 KKLRDVVSKdTREVIGKKRSLSFYV--KGESKSSGWTMTEYYL 185
                      ********967788**********4..3344589*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-3242199IPR003441NAC domain
PROSITE profilePS5100533.29850202IPR003441NAC domain
PfamPF023653.5E-2052184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
KDLAIALEIP HMHYCVYKYD EIKPLCSICL ASSFTRREKK MSMVEKYNEK EVGFRFHPRD  60
QELIRYYLEP KVAKKQNKYV ELEDKTDIYA KEPWRLTHTK SDLFEPNEWY YFVTHDQVSE  120
NVTGKLRNSR KVKGETCEGC WKAPKKLRDV VSKDTREVIG KKRSLSFYVK GESKSSGWTM  180
TEYYLLDGGS FQNQVLCHLK GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-115318518140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003054m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636995.11e-118putative NAC domain-containing protein 94
TrEMBLR0HBL01e-149R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006289517.11e-150(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-47NAC domain containing protein 88