PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003065m
Common NameCARUB_v10003065mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 126aa    MW: 14098.5 Da    PI: 11.0896
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003065mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35e-192963135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C  C+ttkTp+WR gp g+k+LCnaCG+++rk+++
  Carubv10003065m 29 CNDCKTTKTPMWRGGPTGPKSLCNACGIRFRKQRR 63
                     99******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.52E-132164No hitNo description
SMARTSM004011.0E-152383IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2422359IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-152763IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.9E-172963IPR000679Zinc finger, GATA-type
CDDcd002028.99E-102963No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDPRVQIRSR SSTYVSGRME EEKKITRCCN DCKTTKTPMW RGGPTGPKSL CNACGIRFRK  60
QRRSELLGIH IIHRHKTLNS KKLNPKTSSL SSHGGVAVKK RRRSLKEEEQ AALCLLLLSC  120
SSVFA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003065m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289523.13e-87GATA transcription factor 23
SwissprotQ8LC595e-49GAT23_ARATH; GATA transcription factor 23
TrEMBLR0FJX96e-86R0FJX9_9BRAS; Uncharacterized protein
STRINGXP_006289523.11e-86(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.19e-52GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]