PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003066m
Common NameCARUB_v10003066mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 150aa    MW: 17387.6 Da    PI: 9.8175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003066mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.5e-1114104383
                      EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+l++ dv ++grlvlpk+ +           +++  ++++l + d  +++s++v+l+  +++s+ +vl+ GW++  k+ gLk gD + ++
  Carubv10003066m  14 KTLSKTDVDNHGRLVLPKNQMLLViqkmkditKKNLLKGIQLEVLDiIQNNSYSVTLKLaKNTSKDFVLGPGWNNLKKSLGLKKGDNIKLY 104
                      899*****************866577777655333347888999998888*******997888888********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1110106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1310107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-1011117No hitNo description
SMARTSM010192.4E-812118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MENFEIDGDM IISKTLSKTD VDNHGRLVLP KNQMLLVIQK MKDITKKNLL KGIQLEVLDI  60
IQNNSYSVTL KLAKNTSKDF VLGPGWNNLK KSLGLKKGDN IKLYWDYLRY KFIILNFEYR  120
LIPKSDNVME IGAYMSTHNF LLLFYFMLC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003066m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179783.12e-53F-box associated ubiquitination effector family protein
RefseqXP_006296022.11e-54putative B3 domain-containing protein At2g21920
SwissprotQ9SJ072e-54Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0FJ391e-102R0FJ39_9BRAS; Uncharacterized protein
STRINGXP_006289524.11e-103(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.18e-08B3 family protein