PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003464m
Common NameCARUB_v10003464mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 174aa    MW: 20146.9 Da    PI: 9.8424
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003464mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-183589256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +k+ ++t+eql  Le  F+++ +++ +++ +L+k+lgL  rq  vWFqNrRa++k
  Carubv10003464m 35 KKKKRLTSEQLASLEVSFQEDIKLDSDRKLKLSKELGLHPRQTAVWFQNRRARWK 89
                     78889*************************************************9 PP
2HD-ZIP_I/II112.42.9e-3635123189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl++eq+++LE sF+e+ kL+++rK +l++eLgl+prq avWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++ev++Lr+
  Carubv10003464m  35 KKKKRLTSEQLASLEVSFQEDIKLDSDRKLKLSKELGLHPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDEVKRLRA 123
                      59*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-172590IPR009057Homeodomain-like
PROSITE profilePS5007116.2613191IPR001356Homeobox domain
SMARTSM003898.8E-173495IPR001356Homeobox domain
PfamPF000462.3E-153589IPR001356Homeobox domain
CDDcd000865.58E-143592No hitNo description
Gene3DG3DSA:1.10.10.603.3E-183799IPR009057Homeodomain-like
PfamPF021834.6E-793123IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
NSYTQTGPVI AVPESEKMIN TYQCDPSNNN EMINKKKKRL TSEQLASLEV SFQEDIKLDS  60
DRKLKLSKEL GLHPRQTAVW FQNRRARWKV KHLEESYDSL RQEYDAVWRE KQMLHDEVKR  120
LRAIILRDQG LMMNSNQIAR GDQANGIGGY INPMMVGSSH VRWPPISQPP NPW*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003464m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2142320.0KM214232.1 Capsella rubella isolate C.r1504 RCO-A (RCO-A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289854.21e-126putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR03e-67ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLR0FJX21e-126R0FJX2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006289854.11e-127(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-58homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]