PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003642m
Common NameCARUB_v10003642mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 283aa    MW: 32309.5 Da    PI: 9.5395
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003642mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.3e-192772650
                     HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
           SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                     + + ++ +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++
  Carubv10003642m 27 SKKTTTNLSLREQTMFKKASELSILCDIEVCVIYYGRDGELvKTWP 72
                     34455669*******************************9747887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-8273IPR002100Transcription factor, MADS-box
CDDcd002663.94E-201599No hitNo description
SuperFamilySSF554553.27E-1432108IPR002100Transcription factor, MADS-box
PfamPF003194.0E-123268IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.2043267IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSTKKETKLS VRNQTCFKKP SSLSSVSKKT TTNLSLREQT MFKKASELSI LCDIEVCVIY  60
YGRDGELVKT WPEDRSKVRD MAERYSKLNE RVRRKKRTNL SQFLNKKILN DKKTSFDNKD  120
NKFYEKVLEM QASLESSLRM LQDKLQLLQP QNQTESDQCR VVSSSFKDPH QQWTKTEQDL  180
STSSLSQHHQ SKFSVFLYNH GNGSFCQLPD SVSSFDPSTS TTLLGAQGSG LRSNCNNFDL  240
PIPMVFPPQM QTQTPLVHFD QFAGWTQTPS SFADPMIFSS YS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003642m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290011.10.0agamous-like MADS-box protein AGL53
SwissprotQ7X9N21e-117AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1190.0R0H119_9BRAS; Uncharacterized protein
STRINGXP_006290011.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.11e-107AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]