PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10003685m

Common Name

CARUB_v10003685mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 181aa MW: 20103.2 Da PI: 6.2713

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10003685m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k+F + L H++ H Carubv10003685m 27 YKCKYCPKRFDKSQALGGHQNAH 49 9******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.87E-7	24	55	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-5	26	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.071	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MFSSGLSDGS EISDDGSSTG SLENQKYKCK YCPKRFDKSQ ALGGHQNAHR KERELTKKRN 60 LGQLNQSGLD LYRSSFSYPY KFPKEYALPP GFEEPRYKAD RLENQTMMNE YDKYAESLGS 120 NFVGQSQPQP LFSPSSPLSL DLCLGTGKPQ TQPIETTNAA DEMVGENEND GSPLSHSLKR 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10003685m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290051.1	1e-130	zinc finger protein KNUCKLES
TrEMBL	R0H166	1e-129	R0H166_9BRAS; Uncharacterized protein
STRING	XP_006290051.1	1e-130	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15741	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	3e-42	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Carubv10003685m
Entrez Gene	17882697