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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Carubv10003692m |
| Common Name | CARUB_v10003692mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
GRAS |
| Protein Properties |
Length: 484aa MW: 53715.6 Da PI: 4.8861 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10003692m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 338.5 | 1.1e-103 | 104 | 476 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
lv+lL+++Aea + +++ l++ +Larl++l+sp + ++m+Rlaa+ft++L++ l r +++ + + +++ ++++++++a+++++++sP++
Carubv10003692m 104 LVHLLVAAAEASTGVNKSreLTRVILARLKDLVSPGDsTNMERLAAHFTNGLSKLLER--DNVLRPNQHRDD-VYDQADVISAFEMLQNMSPYV 194
689********9985544349**************9989*******************..666654444444.366****************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
+f++lt+ qaIle+v+ e+r+Hi+D+di +G+QW++L+qaL sR+ ++ +lRiT+++++++g s +++e g+rL+ fAe++g pf+f+
Carubv10003692m 195 NFGYLTTTQAILESVKYERRIHIVDYDIAEGVQWASLMQALLSRNtgTSAQHLRITALSRATNGkkSVASVQEAGRRLTTFAESIGQPFSFHH- 287
*********************************************655577*********999999999***********************9. PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleak 274
+ +++++++L++ +gEa+++n++l+l r+ +++ ++ ++L k+l+Pk+v++v++e+ + +++ Fl+rf++ l+ +sa+fdslea+
Carubv10003692m 288 CKLENDAFNTSSLKLVRGEAMVINCMLHLPRFSHQTPNSVI---SFLLEAKTLNPKLVTLVHEEVGLmGNQGFLNRFMDLLHQFSAIFDSLEAG 378
67799***************************988888777...9*********************99************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
l+ ++ +r +vEr+++g+++ n++ +a+ + e++++W ++le+ GF+p+++s + +qaklll+ ++ dgyrvee ++ lvlgWk+r+L
Carubv10003692m 379 LSITNPARGFVERVFIGPWVANWLKRITAD-DTEVESFASWPQWLETNGFEPMEVSFANRCQAKLLLSLFN-DGYRVEELgHNGLVLGWKSRRL 470
*****************************9.88999***********************************.******98688999******** PP
GRAS 368 vsvSaW 373
vs+S+W
Carubv10003692m 471 VSASFW 476
****** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MTMDYPYEDF LDLFFSTNTN STAAAASTSS CGYSLNDIDI DWDCDFRDVI ESIMGDEGVM 60
TESESSPMLL GQEGLCNSAS TGLSVADGVS VEEPKIDESK GLRLVHLLVA AAEASTGVNK 120
SRELTRVILA RLKDLVSPGD STNMERLAAH FTNGLSKLLE RDNVLRPNQH RDDVYDQADV 180
ISAFEMLQNM SPYVNFGYLT TTQAILESVK YERRIHIVDY DIAEGVQWAS LMQALLSRNT 240
GTSAQHLRIT ALSRATNGKK SVASVQEAGR RLTTFAESIG QPFSFHHCKL ENDAFNTSSL 300
KLVRGEAMVI NCMLHLPRFS HQTPNSVISF LLEAKTLNPK LVTLVHEEVG LMGNQGFLNR 360
FMDLLHQFSA IFDSLEAGLS ITNPARGFVE RVFIGPWVAN WLKRITADDT EVESFASWPQ 420
WLETNGFEPM EVSFANRCQA KLLLSLFNDG YRVEELGHNG LVLGWKSRRL VSASFWASHD 480
SNQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
