PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003719m
Common NameCARUB_v10003719mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 267aa    MW: 29426.6 Da    PI: 6.8614
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003719mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.99.8e-151878257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     r+R+++++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Carubv10003719m 18 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgVVGDANVFYWFQNRRSRSRR 78
                     89*****************99****************999999***************997 PP
2Wus_type_Homeobox104.95.1e-341780265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G ++d+NVfyWFQNr++R+r++q
    Carubv10003719m 17 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGVVGDANVFYWFQNRRSRSRRRQ 80
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-14985IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-81283IPR009057Homeodomain-like
PROSITE profilePS5007110.9321479IPR001356Homeobox domain
SMARTSM003894.1E-51683IPR001356Homeobox domain
PfamPF000462.0E-121878IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDQERATQSP STSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEKFGVV  60
GDANVFYWFQ NRRSRSRRRQ RQIQAATAAA ATSGRAEDLQ HMTAMSMHQY PYSNSEIDLG  120
FGSCSNSSAN YFLNGTSSSS QVSSFLLGLS SSSGGCESNN GMENLFTMYG PYGHESDHHL  180
HSSNAHSVLS LSDENSNFQY QQGLITVFIN GVPTEVTKGR IDMKATFGEG SVLLHSSGLP  240
LPTDEFGFLL HSLQHGQSYF LVPRQT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003719m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290080.10.0WUSCHEL-related homeobox 12
SwissprotQ8GY251e-131WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLR0HGR80.0R0HGR8_9BRAS; Uncharacterized protein
STRINGXP_006290080.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-118WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]