PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003744m
Common NameCARUB_v10003744mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 422aa    MW: 46856.8 Da    PI: 7.0387
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003744mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.6e-11121149533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka++++Le 
  Carubv10003744m 121 KTLRRLAQNREAARKSRLRKKAYVQQLES 149
                      7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-9112165No hitNo description
SMARTSM003382.9E-6117206IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.737119163IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.77E-7121162No hitNo description
CDDcd147085.85E-23121173No hitNo description
PfamPF001708.6E-8121151IPR004827Basic-leucine zipper domain
PROSITE patternPS000360124139IPR004827Basic-leucine zipper domain
PfamPF141441.6E-30215289IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MQGHHQNHHQ HLSSASATSS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPSSL  60
PHHYHHTTQN LAMRPPTSTL NIFPSQPMHI EPPPSSTPNK EGNRKGPASS DHDIPKSSDP  120
KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE IQRARSQGVF FGGSLIGGDQ  180
QQGGLPIGSG SISSAEAAVF DMEYARWLEE QQRLLTELRV ATQEHLAENE LRMFVDTCLA  240
HYDHLINLKA MVAKTDVFHL ISGAWKTPAE RCFLWMGGFR PSEIIKVIVN QIEPLTEQQI  300
VGICGLQQST QEAEEALSQG LEALNQSLSD SIVSDSLSPA SAPLPPHLSN FMSHMSLALN  360
KLSALEGFVL QADNLRHQTI HRLNQLLTTR QEARCLLAVA EYFHRLQALS SLWLARPRQD  420
G*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003744m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147870.0AJ314787.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP65 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637541.10.0transcription factor TGA10 isoform X4
RefseqXP_023637543.10.0transcription factor TGA10 isoform X6
SwissprotE3VNM40.0TGA10_ARATH; Transcription factor TGA10
TrEMBLR0FKQ20.0R0FKQ2_9BRAS; Uncharacterized protein
STRINGXP_006290099.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.20.0bZIP family protein
Publications ? help Back to Top
  1. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]