PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10003825m

Common Name

CARUB_v10003825mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 165aa MW: 19393.4 Da PI: 8.6404

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10003825m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	73.9	2.2e-23	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr++Wt + H Fv++ve LGG+e A Pk+il+lm+ + +tl++vkSHLQ+YR Carubv10003825m 15 PRMQWTDDRHYLFVQVVEILGGEELAKPKKILNLMGANNITLSQVKSHLQMYRN 68 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-22	11	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.599	11	71	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.6E-21	15	70	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.33E-15	15	71	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-7	16	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MRDSIVRSYI RSNMPRMQWT DDRHYLFVQV VEILGGEELA KPKKILNLMG ANNITLSQVK 60 SHLQMYRNKK KEKAKQEMRM MWQMYHRQSQ QYVQIYENLI RDVVQIEERF FPEMVNPMVV 120 SCKSLYQSCR VGLNENRGHD VVVAEDGANG EEDMSLELTL GLKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10003825m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635980.1	1e-115	putative Myb family transcription factor At1g14600
TrEMBL	R0HDE7	1e-119	R0HDE7_9BRAS; Uncharacterized protein
STRING	XP_006290157.1	1e-120	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	1e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10003825m
Entrez Gene	17881304