PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004235m
Common NameCARUB_v10004235mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 728aa    MW: 79845.1 Da    PI: 7.2653
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004235mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-095155521954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Carubv10004235m 515 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 552
                      664559******************************88 PP
2BELL121.43.9e-39373444172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g g+a pYt+lA+ka+SrhFrcLkda+a q+
  Carubv10004235m 373 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGQGAALPYTALAQKAMSRHFRCLKDAVAAQL 444
                      589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-76303442IPR006563POX domain
PfamPF075264.0E-49308441IPR006563POX domain
PROSITE profilePS5007112.568493556IPR001356Homeobox domain
SMARTSM003891.2E-9496560IPR001356Homeobox domain
CDDcd000861.68E-12496557No hitNo description
SuperFamilySSF466893.29E-17498563IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-29499562IPR009057Homeodomain-like
PfamPF059203.6E-18513552IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDMGIAKTSS SSTCTILLKT LHNNSMSQDY HHQGGVFSFS NGFDRSDSPS LITHQKQEHQ  60
RVEEMDEESS VAGGGIPVYE TAGMLSEMFN FPGGSRGGRD LDHGQSFRSN RQLLEEQHQN  120
IPALNDSATA TAAAMQLFLM NPPPPHQQQP PSPSSTSTTR SHHNSSTLHM LLPNPSTNTT  180
HHQSYDNNMS MHQQLPHHHN HQQLTWQSSS SDHHHNSQTE IGTIHVENSG GQGLSLSLSS  240
SLEAAAKAEE YRNIYYGANP SNASPHHQYN QFKTLLANSS QHHQVLNQFR PSPTVAAASS  300
SSIGAVNILR HSRYTTSAQE LLEEFCSVGR GFLKKNKQKN NSNPNASGGD GGGGSSPSSA  360
GAIKDHPTLS ASDRIEHQRR KVKLLTMLEE VDRRYNHYCE QMQMVVNSFD IVMGQGAALP  420
YTALAQKAMS RHFRCLKDAV AAQLKQSCEL LGDKDGAGMS SSGLTKGETP RLRLLEQSLR  480
QQRAFHQMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN  540
QVSNWFINAR VRLWKPMVEE MYQQESKERE RERERDQETK NSNNDKSTKP NDNNESNFTA  600
ARTTSSQTPI TTAPDAAAVA TGHRLRSDIN AYENDPSSPL LPSSYSNAAA ASADLGSRYG  660
GGSAAFSAVA TCQQGVGGFV DADMAGVSVI RFGTNPTGDV SLTLGLRHAG NMPDKDPSFC  720
VRDFGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16502560563Homeobox protein Meis2
3k2a_B1e-16502560563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004235m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634772.10.0BEL1-like homeodomain protein 2 isoform X1
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLR0GH260.0R0GH26_9BRAS; Uncharacterized protein
STRINGXP_006283201.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]