PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004359m
Common NameCARUB_v10004359mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 634aa    MW: 71940 Da    PI: 7.0164
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004359mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-094084451954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Carubv10004359m 408 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 445
                      554459******************************88 PP
2BELL107.48.8e-35266337172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e++elqk+kakLls+lee+++rY +y+eq+++ ++sFea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  Carubv10004359m 266 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAASFEAAVGVGAAEVYTALASRAMSRHFRCLKDGLVGQI 337
                      679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.1E-43192333IPR006563POX domain
SMARTSM005749.5E-68198335IPR006563POX domain
PROSITE profilePS5007112.017386449IPR001356Homeobox domain
CDDcd000862.44E-10389450No hitNo description
SMARTSM003895.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466893.25E-17390457IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-28392456IPR009057Homeodomain-like
PfamPF059208.4E-18406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MARDQFYGHH HNQEQQQQQH QMINQIQGFD ETNQNQTDHH HHHQYNHQIF GSNSNMGMMI  60
DFSKQQQIRM TTSGPDHHHH HDQTSGGTDQ NQLLEDSSST MRLCNVNNDF PSEVNDERPP  120
QRPSQGLSLS LSSSNPSSIS LQSFDLRTQQ GYSGKSSTHH QNLQHSQMMM MMMNSHHQNN  180
NHQHHHHHQF QIGSSKYLSP AQELLSEFCS LGVKESDEEV MMMKNKRKQK GKQQEDWDTS  240
HNNNDQQDQS ATTSSKKHVP PLHSLEFMEL QKRKAKLLSM LEELKRRYGH YREQMRVAAA  300
SFEAAVGVGA AEVYTALASR AMSRHFRCLK DGLVGQIQAT SQALGEREED SRAVSIAARG  360
ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV TTLRAWLFEH FLHPYPSDVD  420
KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR GEQVMDITTT TTNPMMMMMI  480
DTKPDPNQMI RVEPESLSSI VTNPTSKMTG QTKATTTTFG STFDFSLYGN NQAVTYAGEG  540
GGPRGDVSLT LGLQQRNDGN GGVSLALSPL TTAHQGTTTT TTGQLYYGTS NIRDHMEQEG  600
PVHQYSASML DDDQVQNLPY RNLMGAQLLH DLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15395453563Homeobox protein Meis2
3k2a_B3e-15395453563Homeobox protein Meis2
4xrm_A3e-15395453563Homeobox protein Meis2
4xrm_B3e-15395453563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004359m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU399440.0U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds.
GenBankAY0492370.0AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283321.10.0homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLR0GHD60.0R0GHD6_9BRAS; Uncharacterized protein
STRINGXP_006283321.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]