PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004386m
Common NameCARUB_v10004386mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 620aa    MW: 71943.9 Da    PI: 8.6175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004386mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07337401245
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwq 45 
                      +r+T+eEdel+++av ++  +                      +Wk Ia+ ++  Rt  ++ +r +
  Carubv10004386m 337 KRFTKEEDELIKKAVLEYIDNhalgddginmvmeckahpqlkgCWKEIASALP-WRTHDSVYNRAH 401
                      69*****************99********************************.****99999976 PP
2Myb_DNA-binding26.31.7e-08409451146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg WT+e+ el ++  k++G++ W+t a  +g  + +k++k+ w+ 
  Carubv10004386m 409 RGVWTQEDFELVIEFQKKHGND-WRTLADALG--KHRKHVKDAWRR 451
                      899*******************.********8..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-6335406IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-7337403IPR009057Homeodomain-like
PROSITE profilePS500905.03338399IPR017877Myb-like domain
PROSITE profilePS512949.105404457IPR017930Myb domain
SMARTSM007179.0E-4408455IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6408451IPR009057Homeodomain-like
SuperFamilySSF466899.33E-8409466IPR009057Homeodomain-like
PfamPF139211.4E-9412470No hitNo description
PROSITE profilePS500906.76454522IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5457523IPR009057Homeodomain-like
SMARTSM0071711458524IPR001005SANT/Myb domain
SuperFamilySSF466892.21E-5502577IPR009057Homeodomain-like
PROSITE profilePS500907.491524577IPR017877Myb-like domain
SMARTSM0071733528579IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MADEKEKKKK SEIRVDSGGT VEEIFPEQVS MMKEKKRKKK KTREREIAER DSEELGEEAL  60
VRKKKSKKQL IDSVAEDGVK KKKKKKGKRE SGSNVVGNSE SPKVCEKPLV RSDKRKREDC  120
DLGDEEYKDK EMKRKSKKRK PSVDSAVEKT SLNSTNRAKR KIKEKKTSVD PEVEEDNEDS  180
TKHAKKEKQE IVDSEVEDNN LMSSTKDARK KSKEKKPSED SELEEDNKDS KKGAKKIQNV  240
DSEAEEIDLN SAKDAKKKKK KNKQSEVSEA ERNNNDSKDA KKKRKKKQEC CPSDKEVTTP  300
SNKSTKRVTF SDQVEFFPAE DEETGDEEEE VKLTRGKRFT KEEDELIKKA VLEYIDNHAL  360
GDDGINMVME CKAHPQLKGC WKEIASALPW RTHDSVYNRA HTIFEEGSRG VWTQEDFELV  420
IEFQKKHGND WRTLADALGK HRKHVKDAWR RIRLASKNKG HWTRQEYQNL FDLVNKDIRM  480
KAFQEKHAKH GMLKDNIPWM AISDVLGTRD HVTCCNKWYD QLTSPMVAKG TWANVDDYRL  540
LEELLKLDAA CIDDVDWDFL LENRDGEACR KRWNQMVLHI GMPKSKTFAE QVEILSERYR  600
PDIAQDRDDF DNRPYDPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16284KKKSKKQLIDSVAEDGVKKKKKK
28088KKKKKKGKR
3280286KKKRKKK
4281285KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004386m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282571.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLR0GFG20.0R0GFG2_9BRAS; Uncharacterized protein
STRINGXP_006282571.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein