PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004551m
Common NameCARUB_v10004551mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 539aa    MW: 60335.6 Da    PI: 5.8573
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004551mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-083363731954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Carubv10004551m 336 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 373
                      664459******************************88 PP
2BELL127.83.8e-41202273172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  Carubv10004551m 202 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 273
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-73137271IPR006563POX domain
PfamPF075262.6E-49143270IPR006563POX domain
PROSITE profilePS5007111.758314377IPR001356Homeobox domain
CDDcd000867.27E-11317378No hitNo description
SMARTSM003891.0E-8317381IPR001356Homeobox domain
SuperFamilySSF466891.58E-16318383IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26320382IPR009057Homeodomain-like
PfamPF059201.0E-17334373IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MENYPETQFL PGNSMIHMNA TVSYSQELAS RERTEATNNV SASQERQALS RFGQVSQMQD  60
ADQDFGSWRD EASDRNGFQL MSAMASSTAH PHTGQGLSLS LGSQILPGIH QSMAPRAEHF  120
RGNEYATQSF PGGNQNLDVV RTIPNSKYLK AAQQLLDEAV NVRKALKQFQ AEGDKNNEKP  180
QEPDHNTQDS STNAPPEISQ SERQEMQSKL TKLLSMLDEV DRRYKQYYQQ MQIVVSSFDV  240
IAGYGAAKPY TALALQTISR HFRSLRDAIS GQILVIRKSL GEQQDGSDGK RVGIISRLKY  300
VDQHLRQQRG FMQPQAWRPQ RGLPENSVLI LRAWLFEHFL HPYPKDSDKI MLARQTGLSR  360
GQVSNWFINA RVRLWKPMVE EIYKEEFTEN DSNSSSENTP KTSEIGPAAA DDEDRAQEFS  420
HDQTKTDHGH DGYGEETCGM VQGSQMDDRR FMAVEPTYHV ADMSRLGRGA VSLTLGLQNS  480
NGHDNVVAMS STEAYNNSFP GVDIYENAIP GAEQEYVNPG SRSQNRTSSS QLVHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14323381563Homeobox protein Meis2
3k2a_B1e-14323381563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004551m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0122910.0BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283499.10.0BEL1-like homeodomain protein 6
RefseqXP_023634761.10.0BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLR0F3V10.0R0F3V1_9BRAS; Uncharacterized protein
STRINGXP_006283499.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]