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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10004566m |
| Common Name | CARUB_v10004566mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
GRAS |
| Protein Properties |
Length: 533aa MW: 58548.2 Da PI: 5.6223 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10004566m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 415 | 6.6e-127 | 155 | 525 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
l+e+L+e+A+av++gd++ a +L l++++s +g+p+qRl +y++e+L+arl +s+s++ykal+++e + e ++++ +++e++P+ kf+
Carubv10004566m 155 LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKALKCNEPT---GRELMSYMGVLYEICPYWKFA 245
5789*****************************************************************9...99999999************* PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
+ taN aIlea++ge+rvHiiDf+i qG Q++ L+q+L +Rp+gpp lR+Tgv++++s+ + l+ +gerL+kfA+++gvpfef+ + +
Carubv10004566m 246 YTTANAAILEAIAGETRVHIIDFQIAQGSQYVFLIQELGKRPGGPPLLRVTGVDDSQSTyaRGGGLSLVGERLTKFAQSCGVPFEFHD-AIMSG 338
*******************************************************999999999************************.78889 PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
+++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr+++
Carubv10004566m 339 CKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDK 432
99******************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF+ p+s++aa a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
Carubv10004566m 433 QRISAEQHCVARDIVNMIACEESERVERHEVLGKWRVRMMMAGFTGWPISTSAAFAASEMLKSYDKN-YKLGGNEGALYLLWKRRPMATCSAWK 525
*****************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQAID NNGFSDIPSK ENFFTLESST ASGSLPSYDS 60
PSVSITSGRS PFSPQGSQSC ISDLHPSPDN VYGSPLSGTS SLAYDEAGVK SKIRELEVSL 120
LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV 180
LEQMVSVSGS PIQRLGTYMA EGLRARLEGS GSNIYKALKC NEPTGRELMS YMGVLYEICP 240
YWKFAYTTAN AAILEAIAGE TRVHIIDFQI AQGSQYVFLI QELGKRPGGP PLLRVTGVDD 300
SQSTYARGGG LSLVGERLTK FAQSCGVPFE FHDAIMSGCK VQREHLGVEP GFAVVVNFPY 360
VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF 420
ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGKWRVR MMMAGFTGWP 480
ISTSAAFAAS EMLKSYDKNY KLGGNEGALY LLWKRRPMAT CSAWKPTLNQ IG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226549 | 0.0 | AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03. |
