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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10004596m |
| Common Name | CARUB_v10004566mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
GRAS |
| Protein Properties |
Length: 519aa MW: 57033.5 Da PI: 5.1403 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10004596m | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 415.1 | 6.1e-127 | 141 | 511 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
l+e+L+e+A+av++gd++ a +L l++++s +g+p+qRl +y++e+L+arl +s+s++ykal+++e + e ++++ +++e++P+ kf+
Carubv10004596m 141 LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKALKCNEPT---GRELMSYMGVLYEICPYWKFA 231
5789*****************************************************************9...99999999************* PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
+ taN aIlea++ge+rvHiiDf+i qG Q++ L+q+L +Rp+gpp lR+Tgv++++s+ + l+ +gerL+kfA+++gvpfef+ + +
Carubv10004596m 232 YTTANAAILEAIAGETRVHIIDFQIAQGSQYVFLIQELGKRPGGPPLLRVTGVDDSQSTyaRGGGLSLVGERLTKFAQSCGVPFEFHD-AIMSG 324
*******************************************************999999999************************.78889 PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
+++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr+++
Carubv10004596m 325 CKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDK 418
99******************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF+ p+s++aa a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
Carubv10004596m 419 QRISAEQHCVARDIVNMIACEESERVERHEVLGKWRVRMMMAGFTGWPISTSAAFAASEMLKSYDKN-YKLGGNEGALYLLWKRRPMATCSAWK 511
*****************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 519 aa
Download sequence Send
to blast |
MLYPQVYCSP QFQAIDNNGF SDIPSKENFF TLESSTASGS LPSYDSPSVS ITSGRSPFSP 60
QGSQSCISDL HPSPDNVYGS PLSGTSSLAY DEAGVKSKIR ELEVSLLSGD TKVEEFSGFS 120
PAAGKSWNWD ELLALTPQLD LKEVLVEAAR AVADGDFATA YGFLDVLEQM VSVSGSPIQR 180
LGTYMAEGLR ARLEGSGSNI YKALKCNEPT GRELMSYMGV LYEICPYWKF AYTTANAAIL 240
EAIAGETRVH IIDFQIAQGS QYVFLIQELG KRPGGPPLLR VTGVDDSQST YARGGGLSLV 300
GERLTKFAQS CGVPFEFHDA IMSGCKVQRE HLGVEPGFAV VVNFPYVLHH MPDESVSVEN 360
HRDRLLHLIK SLSPKLVTLV EQESNTNTSP FLSRFVETLD YYTAMFESID AARPRDDKQR 420
ISAEQHCVAR DIVNMIACEE SERVERHEVL GKWRVRMMMA GFTGWPISTS AAFAASEMLK 480
SYDKNYKLGG NEGALYLLWK RRPMATCSAW KPTLNQIG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226549 | 0.0 | AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03. |
