PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004688m
Common NameCARUB_v10004390mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 488aa    MW: 53871.9 Da    PI: 7.4319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004688mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.5e-32139196260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  Carubv10004688m 139 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 196
                      8****************************************.***************85 PP
2WRKY107.18.9e-34310368159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Carubv10004688m 310 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 368
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388133197IPR003657WRKY domain
SuperFamilySSF1182906.41E-25136197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-27137197IPR003657WRKY domain
SMARTSM007748.5E-34138196IPR003657WRKY domain
PfamPF031062.0E-24139195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37295370IPR003657WRKY domain
SuperFamilySSF1182901.96E-29302370IPR003657WRKY domain
PROSITE profilePS5081138.825305370IPR003657WRKY domain
SMARTSM007747.7E-39310369IPR003657WRKY domain
PfamPF031063.4E-26311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MIMLPEPSPT TGSLFKPRPV HISASPSSYT GRAFHQNTFT EQKSSEFEFR PPASNMVYAE  60
VGKHRSEPPL QFQGQGHGSS HSPSSISDAA GSSSELSRPT PPRQMTSTSS DILAGSDQDE  120
SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD  180
GQITDIIYKG THDHPKPQPG RRNSGGLGMA AQEERLDKYP SSTGRDEKGS GVYNVSHPNE  240
QAGNPEIPHT TTTDDGGEAA ASNKNKDDPE DDDPFSKRRR MDGVMEITPL VKPIREPRVV  300
VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTAAG CPVRKHVERA SHDPKAVITT  360
YEGKHNHDVP TSKSSSNHDI QPRFRPDETD TISLNLGVGI SSDGPNHTSN EHQHQNQQLV  420
NQSHPNGVNF RFVHASPMPS YYASLNSGMN QYGPRETKNE TQNGDISSLN HSSYPYPPNI  480
GRIQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37137370877Probable WRKY transcription factor 4
2lex_A6e-37137370877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004688m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1504360.0AY150436.1 Arabidopsis thaliana unknown protein (At4g26640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633666.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GHF90.0R0GHF9_9BRAS; Uncharacterized protein
STRINGXP_006283345.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.10.0WRKY family protein