PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004700m
Common NameCARUB_v10004700mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 484aa    MW: 53666.9 Da    PI: 4.8972
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004700mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.22e-1011204822374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++      +  p + +s+++ ++++ a k +s +sPi+ fs
  Carubv10004700m 120 IEDLIRVVDCVESDELQLAQVVLSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTG-----NNRTPIRLSSWSEIVQRIRAIKEYSGISPIPLFS 208
                      678*************************99*************************.....888899999999********************** PP

             GRAS  95 hltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      h+taNqaIl++++++     vH++Df+i+ G+Q+++L++++a+++ +   lR+T+v+++e   + e++ ++e+L++fA+e++++f++++++ k+
  Carubv10004700m 209 HFTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSVSGGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLLKT 300
                      ************99977789**************************************66..9******************************* PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                      +e+l+++++r+ +gE ++V ++ +++r l       s + ++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p
  Carubv10004700m 301 FEMLSFKAIRFVEGERTVVLISPAIFRRL-------SGIADFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAP 387
                      ****************************9.......34556*******************76677899************************** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      + +  ++ vE+++l+++i+ +v ++ ++   r++  ++Wre++ +aG++p++ls++a  qa++ll+k +++g++v +++g+lvl+W++r+Lv++
  Carubv10004700m 388 PGDLVKKIVEAFVLRPKISAAVETAADR---RNTGDMTWREAFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVAT 478
                      ************************9998...99999********************************************************** PP

             GRAS 371 SaWr 374
                      SaWr
  Carubv10004700m 479 SAWR 482
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.71193462IPR005202Transcription factor GRAS
PfamPF035146.8E-99120482IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MKIPASSPQD TTTNNNSTDS NHLSMDEHVM RSMDWDSIMK ELELDDDSAP NSLKTSFPTS  60
TTDSTILPLY AVDSNLPGFP DQIQPSDFES STDVYPGQNQ ATGYGFNSLD SVDNGGFDFI  120
EDLIRVVDCV ESDELQLAQV VLSRLNQRLR SPAGRPLQRA AFYFKEALGS LLTGNNRTPI  180
RLSSWSEIVQ RIRAIKEYSG ISPIPLFSHF TANQAILDSL SSQSSSPFVH VVDFEIGFGG  240
QYASLMREIA EKSVSGGFLR VTAVVAEECA VETRLVKENL TQFAAEMKIR FQIEFVLLKT  300
FEMLSFKAIR FVEGERTVVL ISPAIFRRLS GIADFVNNLR RVSPKVVVFV DSEGWTEIAG  360
SGSFRREFVS ALEFYTMVLE SLDAAAPPGD LVKKIVEAFV LRPKISAAVE TAADRRNTGD  420
MTWREAFCAA GMRPIQLSQF ADFQAECLLE KAQVRGFHVA KRQGELVLCW HGRALVATSA  480
WRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2711348113378Protein SCARECROW
5b3h_A3e-2712548124377Protein SCARECROW
5b3h_D3e-2712548124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004700m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankBT0118070.0BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283643.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0F5610.0R0F561_9BRAS; Uncharacterized protein
STRINGXP_006283643.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]