PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004702m
Common NameCARUB_v10004702mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 484aa    MW: 54212.7 Da    PI: 7.9824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004702mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-2022961193
                     HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                     + ++ l +p kf++eh +g k+e+kt++l++  s r+Wevk+  ++++    lt+GW eFv+a++L+ gDfvvF+++g++ f  +
  Carubv10004702m 22 F-KSYLKIPVKFFSEHiEG-KHEGKTVKLRSdASERTWEVKM--DGNR----LTQGWTEFVEAHDLRIGDFVVFRHEGDMLF--H 96
                     3.4569**********644.56789*****97889*******..9999....***********************9887766..4 PP
2B370.22.7e-22145238298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f++++p ++ +s++++lp +fa+++g +k    +++l++e+g+sWe k+  +k  g++++ +GWk+ +++n+Lk+gD+++Fkl + + +++v++
  Carubv10004702m 145 FSKTVPRSSISSDMVTLPIDFARRNGFDKGM-HEIVLMNEQGKSWESKV-KSKIAGQVFIHGGWKGLCRENKLKVGDSCTFKLLQ-NAERPVFQ 235
                      5678899******************888766.59***************.47777889************************998.56668999 PP

                      EE- CS
               B3  96 vfr 98 
                      +++
  Carubv10004702m 236 LCS 238
                      986 PP
3B337.25.2e-12267360799
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++lk g  +l+  f+++++++k e  +++l d++  +W +kl++++++ +    +  ++ Wk+F++an++ +g +++++l++  ++++++k+
  Carubv10004702m 267 TANSLKIGKQRLSLYFTSANMLNKLE--KIILVDKDKVEWLMKLKVDRSDTSgavfICGGNDWKGFCSANEVGAGQSLTLELIR-GSGSPLLKF 357
                      45566667778888999999999655..8***************998887777643333466********************98.78889***9 PP

                      E-S CS
               B3  97 frk 99 
                      ++k
  Carubv10004702m 358 CSK 360
                      987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-255105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-229110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.73311103IPR003340B3 DNA binding domain
CDDcd100171.10E-181297No hitNo description
SMARTSM010195.4E-2514103IPR003340B3 DNA binding domain
PfamPF023621.4E-142394IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-21138237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20142237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.113144240IPR003340B3 DNA binding domain
CDDcd100175.17E-20144238No hitNo description
PfamPF023621.5E-21145238IPR003340B3 DNA binding domain
SMARTSM010193.6E-28145240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-11258360IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589261361IPR003340B3 DNA binding domain
CDDcd100172.44E-11261359No hitNo description
SMARTSM010194.0E-19261361IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-11262363IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-11263360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MANASPSSPT NHHFFQPLLN GFKSYLKIPV KFFSEHIEGK HEGKTVKLRS DASERTWEVK  60
MDGNRLTQGW TEFVEAHDLR IGDFVVFRHE GDMLFHVIAL GSSCCEIQYS QSSSHEEGEE  120
SDDIEKTARP EKEVEENVQK ESDCFSKTVP RSSISSDMVT LPIDFARRNG FDKGMHEIVL  180
MNEQGKSWES KVKSKIAGQV FIHGGWKGLC RENKLKVGDS CTFKLLQNAE RPVFQLCSCT  240
EVKRKKKVRF AEDDQTGENR FVELTPTANS LKIGKQRLSL YFTSANMLNK LEKIILVDKD  300
KVEWLMKLKV DRSDTSGAVF ICGGNDWKGF CSANEVGAGQ SLTLELIRGS GSPLLKFCSK  360
KEQPPNEAED GIRKKARVQQ NGSLETCKRG PSRASKMGPE LEIRDKTAEK GEPSRASSGD  420
QGKLQQKQPC SVIDQVAKVK ESVVDTLTCI RRFLAELEPM EQKLEDSLQA INKLGMISNL  480
ISY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004702m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412941e-121AJ441294.1 Arabidopsis thaliana mRNA for putative auxin response factor 23 (arf23 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283645.20.0B3 domain-containing protein REM8 isoform X1
SwissprotQ8H2D10.0REM8_ARATH; B3 domain-containing protein REM8
TrEMBLR0GZI50.0R0GZI5_9BRAS; Uncharacterized protein
STRINGXP_006283645.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]