PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004729m
Common NameCARUB_v10004729mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 474aa    MW: 53285 Da    PI: 6.9706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004729mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35251162102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+++++++sws+n+nsf+v+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll+
  Carubv10004729m  25 FLVKTYEMVDDSSTDQIVSWSSNNNSFIVWNHAEFSSHLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQKHLLK 109
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Carubv10004729m 110 NIHRRKA 116
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.2E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3721114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.06E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MNGALGNSSV SMSGGGEGAG GPAPFLVKTY EMVDDSSTDQ IVSWSSNNNS FIVWNHAEFS  60
SHLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFSNDDF IKDQKHLLKN IHRRKAIHSH  120
SHPPASSADQ ERAVLQEQMD KLSREKSAIE AKLLKFKQQK AVAKHQFEEM TEHVDDMEKR  180
QKKLLNFLET AIRNPSFIKN FGRKVEQLDI SAYNKKRRLP QVEQSKPPSE DSHLDNSSGS  240
SRPESGNIFH QNFSNKLRLE LSPAVSDMNM ISHSIQSSNE EGASPKGILS GCDPKTTLTR  300
REGLPFAPEA LELADTGTCP RRLLLNDNTR VETLQQRLTS SEETDGFSCH LNLTLASAPL  360
PDKTASQIAK TNHKNQEIGR YTELNFNSIE TSASEKNRGR QQEVAVGVNQ ANAAPPARVN  420
DVFWEQFLTE RPGSSDNEEA SSTYRGNPYE EQEDRRNGNI ISRNTKNIEH LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2431141129Heat shock factor protein 1
5d5v_B3e-2431141129Heat shock factor protein 1
5d5v_D3e-2431141129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004729m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395280.0AY039528.1 Arabidopsis thaliana AT4g13980/dl3030c mRNA, complete cds.
GenBankBT0010560.0BT001056.1 Arabidopsis thaliana At4g13980/dl3030c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283672.10.0heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLR0GW900.0R0GW90_9BRAS; Uncharacterized protein
STRINGXP_006283672.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]