PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004743m
Common NameCARUB_v10004743mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 468aa    MW: 53358.9 Da    PI: 6.0867
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004743mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.3e-083854231854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  Carubv10004743m 385 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 423
                      5887779******************************88 PP
2BELL90.91.3e-29260330172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r++l+++k++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  Carubv10004743m 260 QRRALESQKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 330
                      6899*****************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-59190328IPR006563POX domain
PfamPF075262.2E-28196326IPR006563POX domain
PROSITE profilePS5007110.981364427IPR001356Homeobox domain
CDDcd000869.39E-10367428No hitNo description
SMARTSM003897.1E-5367431IPR001356Homeobox domain
SuperFamilySSF466895.99E-15368436IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-25370433IPR009057Homeodomain-like
PfamPF059201.5E-14384423IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDNDNTFTSL DNVMANQNPL LMDFIPSRED STPFSTMLPW NSIRSDPLQM AGFDFFNSML  60
TNKYLSSSSR SFDDVQENRN VESFEVMAPP PPPPPLDHFR PYDDSSNNLW GFEGNSEFQT  120
YSGVVGPSEP MMSTFGEEDF PFLISNKRNN ELSLSLATDV SDECSEISLC GATNLASEQA  180
SCSSKDISTQ SFSQLIFGSK YLHSVQEILS HFASYSLDYS SRGTESAAAS SAFHSRFENL  240
TEFLDDDSNN SEAEFGSTLQ RRALESQKTH LLDLLQMVDD RYSHCVDEIH TVVSAFHAAT  300
ELDPQLHTRF ALQTISFLYK NLRERICKKI LAMGSVLERG KDKSQENSMF HQHCLLQQLK  360
RKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL HPYPKDSEKH LLAIRSGLTR SQVSNWFINA  420
RVRLWKPMIE EMYAEMNKRK LNNSHLQPNG ATLRMPKSVM MSQAMHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-14373431563Homeobox protein Meis2
3k2a_B8e-14373431563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004743m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283680.10.0homeobox protein ATH1
RefseqXP_023634731.10.0homeobox protein ATH1
RefseqXP_023634732.10.0homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLR0GZK70.0R0GZK7_9BRAS; Uncharacterized protein
STRINGXP_006283680.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]