PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005147m
Common NameCARUB_v10005147mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 353aa    MW: 38251.1 Da    PI: 10.279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005147mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30283341259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Carubv10005147m 283 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 341
                      69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-16247280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32270341IPR003657WRKY domain
PROSITE profilePS5081129.872277343IPR003657WRKY domain
SuperFamilySSF1182901.44E-25280341IPR003657WRKY domain
SMARTSM007745.9E-37282342IPR003657WRKY domain
PfamPF031065.7E-26284340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAVELMMSSS SYGGVKGDGF PAISAAVKME DTALREAASA GIHGVEEFLK LIGQTQSQPT  60
EKSQTEITAV TDVAVNSFKK VISLLGRSRT GHARFRRAPT TTATQTPFIK QTAVEEEEEK  120
KPETTAVFAK QKTEQYHAGG SAFRVYCPTP IHRRPPLSHS NQNQTTKNGS SSSSPPILAN  180
GGAPSTINFA PSPPVSATNS FMSSHSHRCD TADTSHMSSG FEFTNPSHVS GSRGKPPLSS  240
ASLKRRCNSS PSSRCHCSKK RKSRVKRVIR VPAVSSKMAD IPSDEFSWRK YGQKPIKGSP  300
HPRGYYKCSS VRGCPARKHV ERALDDAMML IVTYEGDHNH ALVLETHHDK TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21270342273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243261KRRCNSSPSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005147m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284025.10.0probable WRKY transcription factor 7
SwissprotQ9STX00.0WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLR0H0E10.0R0H0E1_9BRAS; Uncharacterized protein
STRINGXP_006284025.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-174WRKY DNA-binding protein 7