PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10005240m

Common Name

CARUB_v10005240mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 325aa MW: 36501.6 Da PI: 4.6351

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10005240m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.7	1.9e-10	50	128	2	80
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt + l L++ +e + +++ + ++W +s+++ ++r+ +qC+ kw++l +y +ik++e++ + ++s ++ Carubv10005240m 50 WTVKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNILDVRRTLNQCRRKWDSLLSDYNQIKKWESRYAGSARSYWS 128 99999999999999******************************************************98666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-8	49	127	No hit	No description
PROSITE profile	PS50090	6.632	50	106	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MIAFASASLI NSDIAHSSSS TGVDVSVSGD LMDEGSSGSR RLRSQVAPDW TVKDCLILVN 60 EIAAVEADCS NALSSFQKWT MISENCNILD VRRTLNQCRR KWDSLLSDYN QIKKWESRYA 120 GSARSYWSLS TEKRKLLNLP GNVDNELFES INAVVMIQDD KAGTESDSDP EAQDLVDVTA 180 ELDFVGSKRS RHRTTVTKEI PQQKTKRKEP QTYRVQENTQ QKPTKATHQN INMEEKKKAV 240 EEISTDEEEE ETMNIEEDVE VMEAKLSYKI DLIHAIAGRN LAKDNDTGDD ISINDKLKYG 300 RQQGDELISC LSEIVNTLSR LREV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10005240m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284106.2	0.0	trihelix transcription factor ASR3 isoform X2
Refseq	XP_006284107.1	0.0	trihelix transcription factor ASR3 isoform X1
TrEMBL	R0GJH3	0.0	R0GJH3_9BRAS; Uncharacterized protein
STRING	XP_006284106.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-152	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Carubv10005240m
Entrez Gene	17880700