PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005257m
Common NameCARUB_v10005257mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BES1
Protein Properties Length: 323aa    MW: 34443.4 Da    PI: 8.8873
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005257mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822218.71.3e-67201602145
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                      +sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg kp+ ++++ g+ ++ s++ss+q
  Carubv10005257m  20 SSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGLKPP-ASDISGTPTNFSTNSSIQ 112
                      89*************************************************************************.****************** PP

           DUF822  96 sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                       s++ssa++sp++sy+ sp sssfpsps++d ++++    llp+l++ ++
  Carubv10005257m 113 PSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 160
                      *********************************987..899999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.8E-6220144IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAAGGGTVGV GGGGGGGGSS SGRTPTWKER ENNKKRERRR RAITAKIYSG LRAQGNYKLP  60
KHCDNNEVLK ALCLEAGWIV EDDGTTYRKG LKPPASDISG TPTNFSTNSS IQPSPQSSAF  120
PSPAPSYHGS PVSSSFPSPS RYDGNPSSYL LLPFLHNIAS SIPANLPPLR ISNSAPVTPP  180
LSSPTSRGSK RKLTSEQLPN GGSLHALRHP LFAISAPSSP TRRAGHQTPP TIPECDESEE  240
DSIEDSGRWI NFQSTAPTSP TFNLVKQTSM VIDMKRSDWG MNGRGAEFEF ENGTVKPWEG  300
EMIHEVGVED LELTLGGTKT RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-2623101372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-2623101372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-2623101372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-2623101372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005257m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284125.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A430.0BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLR0H0R80.0R0H0R8_9BRAS; Uncharacterized protein
STRINGXP_006284125.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.17e-97BES1/BZR1 homolog 2