PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005348m
Common NameCARUB_v10005240mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 304aa    MW: 34646.8 Da    PI: 4.8455
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005348mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.91.7e-1029107280
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                      Wt +  l L++    +e + +++ +  ++W  +s+++    ++r+ +qC+ kw++l  +y +ik++e++ +  ++s ++
  Carubv10005348m  29 WTVKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNILDVRRTLNQCRRKWDSLLSDYNQIKKWESRYAGSARSYWS 107
                      99999999999999******************************************************98666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-828106No hitNo description
PROSITE profilePS500906.6322985IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVKNSSCIFR MDEGSSGSRR LRSQVAPDWT VKDCLILVNE IAAVEADCSN ALSSFQKWTM  60
ISENCNILDV RRTLNQCRRK WDSLLSDYNQ IKKWESRYAG SARSYWSLST EKRKLLNLPG  120
NVDNELFESI NAVVMIQDDK AGTESDSDPE AQDLVDVTAE LDFVGSKRSR HRTTVTKEIP  180
QQKTKRKEPQ TYRVQENTQQ KPTKATHQNI NMEEKKKAVE EISTDEEEEE TMNIEEDVEV  240
MEAKLSYKID LIHAIAGRNL AKDNDTGDDI SINDKLKYGR QQGDELISCL SEIVNTLSRL  300
REV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005348m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284107.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLR0GXI90.0R0GXI9_9BRAS; Uncharacterized protein
STRINGXP_006284106.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-152sequence-specific DNA binding transcription factors