PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10005452m

Common Name

CARUB_v10005452mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 278aa MW: 31635.7 Da PI: 8.4327

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10005452m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	88.1	1.1e-27	66	161	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +++ w+e+D +++L+G+++++++t+ s+s+d++++y+ +++s+++++sk+ql +Ki +LK +f++ ++++++g++ sf+++ d++if ls iW Carubv10005452m 66 PKMNWTETDMLLILRGIVKYQNETKLSYSSDWSGVYDLIRGSMESDFSKRQLQNKILKLKWRFEEYQTRSNDGRSLSFANALDKQIFRLSWAIW 159 6899****************************************************************************************** PP DUF573 97 gs 98 g+ Carubv10005452m 160 GQ 161 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.0E-21	67	160	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MMKRHGEGSD SSEDSSSDCF EIRHNAQPLT RNHEDDDECS GTEATIGERK KMKTKTLLVS 60 SVAAAPKMNW TETDMLLILR GIVKYQNETK LSYSSDWSGV YDLIRGSMES DFSKRQLQNK 120 ILKLKWRFEE YQTRSNDGRS LSFANALDKQ IFRLSWAIWG QNKTKSAFSE NKMDQSKVLK 180 ERVPCVEQVR VSKAIDDGEI DKSEDLNVLQ EALEVAASFQ SFGKYQQKSL LRNLKNLGAT 240 QRKELTDEWK ALLAEEMQLS VKKQSFYAKL VTAAFSA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10005452m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284283.1	0.0	GLABROUS1 enhancer-binding protein-like 3 isoform X1
TrEMBL	R0F6M4	0.0	R0F6M4_9BRAS; Uncharacterized protein
STRING	XP_006284283.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	1e-33	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Carubv10005452m
Entrez Gene	17880612