PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005574m
Common NameCARUB_v10005574mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 252aa    MW: 29101.6 Da    PI: 4.2391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005574mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.62.1e-22321471119
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lp G+rF+P+d e+ v++L kkv g+++++ +v +e+ di++++P+d+p + ++e+++wyf++ + k++      +++     W  tg+++evl
  Carubv10005574m  32 LPIGMRFRPSDLEMAVYFLLKKVLGHHMKARTVPQEChDIFSTHPRDFPDNDQEEDEHWYFYCLKTKNKFA----TKS--YNLWIPTGEETEVL 119
                      699***************************99999999***********77778899*******9876532....222..347*********** PP

              NAM  94 sk..kgelvglkktLvfykgrapkgekt 119
                      +   ++elvg+k++++f ++++++ ek+
  Carubv10005574m 120 DPkkNDELVGIKRSFAFIENEDEEEEKS 147
                      98667778**********8877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-2825188IPR003441NAC domain
PROSITE profilePS5100527.71732188IPR003441NAC domain
PfamPF023651.6E-933168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MIVANLADDI LFSFFFSLLF LLAMGRVTYS DLPIGMRFRP SDLEMAVYFL LKKVLGHHMK  60
ARTVPQECHD IFSTHPRDFP DNDQEEDEHW YFYCLKTKNK FATKSYNLWI PTGEETEVLD  120
PKKNDELVGI KRSFAFIENE DEEEEKSENN SLPDEEEEPP RYNWFLDEIS LPLTVVDTQW  180
TLCHVFCKNT KPEFVSLPVM ESQSESESQS KSESESDQSE EKKESVDKPA ETLDIGKEKD  240
ETVLTPPPPS P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005574m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284403.10.0NAC domain-containing protein 104 isoform X1
TrEMBLR0F6W50.0R0F6W5_9BRAS; Uncharacterized protein
STRINGXP_006284403.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.16e-80NAC domain containing protein 95