PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005605m
Common NameCARUB_v10005261mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 246aa    MW: 28662.4 Da    PI: 10.3583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005605mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.8e-32164217255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Carubv10005605m 164 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 217
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15161218IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-28162218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23164218IPR006447Myb domain, plants
PfamPF002496.3E-7165216IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MELFPSQPDL YLKISRRREE EEKENQEQEV ERRLGFRSKA SDSDRNSSGN LIHNLQFTSN  60
SELTKVDKNH QEHNKSLDQD LRSMLMMRPI RGIPLYQNQV LDHHYYYSST SPTPFFFSEV  120
NGQQHASRRV ITNPNCSFNF HHRNRRQAQP QPPRFTAKRG VRAPRMRWTT TLHAHFVHAV  180
QLLGGHERAT PKSVLELMDV QDLTLAHVKS HLQMYRTIKS TEKPTTSSGL IDLIKLSVKY  240
YIQAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-16165219458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005605m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284129.11e-173probable transcription factor KAN3
SwissprotQ941I21e-132KAN3_ARATH; Probable transcription factor KAN3
TrEMBLR0H0S30.0R0H0S3_9BRAS; Uncharacterized protein
STRINGXP_006284129.11e-172(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-109G2-like family protein