PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005611m
Common NameCARUB_v10005611mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 245aa    MW: 27187.2 Da    PI: 5.0992
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005611mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18172206135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ +Tp+WR gp g ktLCnaCG+++++ +l
  Carubv10005611m 172 CSHCGVEETPQWRMGPLGAKTLCNACGVRFKSGRL 206
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.2E-831242IPR016679Transcription factor, GATA, plant
SMARTSM004014.5E-14166220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147166202IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-13169229No hitNo description
Gene3DG3DSA:3.30.50.104.8E-14170204IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
PfamPF003201.8E-16172206IPR000679Zinc finger, GATA-type
CDDcd002021.55E-14172228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MECVEALLAD FSVDDLFDFS NADTAFIRED ESSSSQREEG EEDEQERDKA KSLSDQSTHL  60
SPLEDLLSFP RDDVPSVKAG DLENLEWLSK FVEDSFSESY LSGDFPVSVD EAQNQRQCVP  120
AKPRSKRRRT NGRIWSLEST SPLLPTAVSG KKKRGKHTAE VSSGDGVQQR CCSHCGVEET  180
PQWRMGPLGA KTLCNACGVR FKSGRLLPEY RPACSPTFST EIHSNSHRKV LELRLMKSAD  240
PGRV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005611m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284437.11e-180GATA transcription factor 7
SwissprotO655151e-124GATA7_ARATH; GATA transcription factor 7
TrEMBLR0GYE71e-179R0GYE7_9BRAS; GATA transcription factor
STRINGXP_006284437.11e-179(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-117GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]