PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005663m
Common NameCARUB_v10005663mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 229aa    MW: 26683.2 Da    PI: 8.9982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005663mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-12125166351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  Carubv10005663m 125 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 166
                      79**96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.572102179IPR001471AP2/ERF domain
PfamPF008471.8E-6124167IPR001471AP2/ERF domain
SMARTSM003804.9E-5124183IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9125169IPR016177DNA-binding domain
CDDcd000182.38E-12126177No hitNo description
Gene3DG3DSA:3.30.730.101.1E-8126170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
RESETFNMVS LRRRRLLGLC CGPNGYVTPL PFLTAEEMIT GIPNPNASVA YTPGQVEKVD  60
EPKEEENMSV EESGRRTRSN HMHFRSEYSD ISPVDSDSIS PKYQPLKRRK RHRRKHVHNQ  120
EPCLMRGVYY KNMKWQAAIK VEKRQIHLGT FSSQEEAARL YDRAAFMCGR EPNFALSEDV  180
IRELKQQSWE EFLACTRRTI TNKKPKRRLE QEDKENNASM LHCPPQEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005663m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336901e-160AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284477.21e-166ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP91e-113ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLR0GYI91e-170R0GYI9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006284477.11e-171(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.31e-102ERF family protein