PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005784m
Common NameCARUB_v10005784mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 197aa    MW: 22282.4 Da    PI: 8.2568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005784mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.2e-102270555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                      + +E++RR +++s ++eL +llP+    +s+      + L +A +YIk+Lq
  Carubv10005784m 22 RKTIEKNRRMQMKSLYSELISLLPHH---SSREtSALPDQLDEAANYIKKLQ 70
                     5789*********************7...566635567*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.65E-41674No hitNo description
PROSITE profilePS5088810.5121769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-82284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.52E-92285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-42375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-52370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
EQTNTMEPSH SNTAQSRRSV DRKTIEKNRR MQMKSLYSEL ISLLPHHSSR ETSALPDQLD  60
EAANYIKKLQ VNVEKKRERK RKLVATTTFE KLNSAGSSLA SSSVDVSVPK RLPKIEIQEM  120
GSILHIFLVT SLEHKFMFGE IIRVLTEELG AEITHAGYSI VDDAVFHTLH CKVEECDYGA  180
RSQIPERLEK FVNSVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17382EKKRERKRKL
27582KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005784m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936861e-179AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284564.21e-139transcription factor bHLH162 isoform X1
SwissprotF4JIJ71e-111BH162_ARATH; Transcription factor bHLH162
TrEMBLR0F6L91e-142R0F6L9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006284564.11e-143(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-104bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]