PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005829m
Common NameCARUB_v10005829mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 185aa    MW: 20916.7 Da    PI: 9.8693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005829mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162367147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     + ++T eE+++ v a++ +G++ W++Ia+++  gRt+ ++k++w+ +
  Carubv10005829m 23 KTPFTVEEEKIMVSAHNFYGNK-WSKIAKHLK-GRTDIDVKNHWNAH 67
                     569*******************.********9.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.461117IPR017877Myb-like domain
SuperFamilySSF466895.31E-24173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-9230IPR009057Homeodomain-like
PROSITE profilePS5129422.8291872IPR017930Myb domain
SMARTSM007176.8E-142270IPR001005SANT/Myb domain
PfamPF002492.0E-132367IPR001005SANT/Myb domain
CDDcd001677.26E-122568No hitNo description
Gene3DG3DSA:1.10.10.601.5E-173169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEARTGKSCR FRWFNQLDPT IDKTPFTVEE EKIMVSAHNF YGNKWSKIAK HLKGRTDIDV  60
KNHWNAHMNR TAWRPKTKPN RRLFTTSLNP YGYSVPGNVS YEGIGIKNCS SNMRNEETTN  120
LYPHPRMPVQ LSGHHHHFPI FPASGSLALS TELSISQPSS SPEAADVMIR KTPEFIDFLG  180
VGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2017034103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954KHLKGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005829m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284977.21e-120transcription factor MYB117
TrEMBLR0GYZ61e-136R0GYZ6_9BRAS; Uncharacterized protein
STRINGXP_006284597.11e-137(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-39myb domain protein 110