PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006026m
Common NameCARUB_v10006026mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 127aa    MW: 14838.1 Da    PI: 10.4333
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006026mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.25.5e-19121032100
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F +++y+++ed++ + +isw +++nsfv+++ eef++k +   F  s+f+ F   L  YgFk +k+ +++        e+ ++ F +g+ e l+
  Carubv10006026m  12 FHMRIYKVVEDPSSDPIISWGKDNNSFVIWNLEEFTRKNIVGNFNCSRFSEFRSELRYYGFKGIKKGSGE-------LEYGNEDFVRGQPERLK 98 
                      7889****************************************************************99.......***************99 PP

                      XXXXX CS
     HSF_DNA-bind  96 kikrk 100
                      ++  k
  Carubv10006026m  99 TMMIK 103
                      87654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-22797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-258103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.17E-219100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-1712100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MALNFPKGVS VFHMRIYKVV EDPSSDPIIS WGKDNNSFVI WNLEEFTRKN IVGNFNCSRF  60
SEFRSELRYY GFKGIKKGSG ELEYGNEDFV RGQPERLKTM MIKAWRKNKA KFKARKAAEE  120
MQRLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006026m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284761.12e-89heat stress transcription factor A-1
TrEMBLR0GL954e-88R0GL95_9BRAS; Uncharacterized protein
STRINGXP_006284761.16e-89(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-40HSF family protein