PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006084m
Common NameCARUB_v10006084mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 106aa    MW: 12240.7 Da    PI: 9.6961
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006084mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-093579345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
  Carubv10006084m 35 TWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 79
                     5*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.2023186IPR017884SANT domain
SMARTSM007172.3E-93284IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-63588IPR009057Homeodomain-like
PfamPF002491.6E-73579IPR001005SANT/Myb domain
CDDcd001671.79E-83582No hitNo description
SuperFamilySSF466891.64E-133689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
NQSSIKIQKT FFNLPLSIYI LIRVMASNSM SSNATWTRKE NKLFERALAI YDQDTPDRWH  60
NVARAVGGKS AEEVRRHYEL LIRDVNDIES GRYPHPNYYS NGNNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-3025104179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006084m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0107701e-101BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282757.22e-55protein RADIALIS-like 3
SwissprotQ6NNN04e-46RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL01e-72R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282757.12e-73(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-36RAD-like 6