PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006110m
Common NameCARUB_v10006110mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 101aa    MW: 11319.5 Da    PI: 9.0822
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006110mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-081257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+   + + +a + +  +   +W  +a+ +g g+t +++k ++ 
  Carubv10006110m 12 GSWTAKQNKAFEQALATYDQDtpnRWYNVAKVVG-GKTTEEVKRHYE 57
                     89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.915964IPR017884SANT domain
SMARTSM007176.6E-81062IPR001005SANT/Myb domain
PfamPF002491.5E-61257IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-121268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-51366IPR009057Homeodomain-like
CDDcd001671.43E-61460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSMSSHS SGSWTAKQNK AFEQALATYD QDTPNRWYNV AKVVGGKTTE EVKRHYELLV  60
QDINSIENGH VPFPNYRASG GCTNGRLSHE EKRMRDMRLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-357100393RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006110m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3752311e-124DQ375231.1 Arabidopsis thaliana AtRL1 (At4g39250) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284830.18e-72protein RADIALIS-like 1
SwissprotF4JVB82e-60RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLR0H2J52e-70R0H2J5_9BRAS; Uncharacterized protein
STRINGXP_006284830.13e-71(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-61RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]