PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10006209m

Common Name

CARUB_v10006209mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 209aa MW: 23619.3 Da PI: 4.7897

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10006209m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.2	2.4e-09	12	49	2	39
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +i+ k r v fs+Rrng+ KA+ L+ L +ae a++ Carubv10006209m 12 KIQKKESRAVAFSQRRNGLYNKASQLCRLSGAEMAILT 49 799999*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.2E-7	3	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.002	3	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.15E-16	4	82	No hit	No description
SuperFamily	SSF55455	1.7E-13	5	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-5	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.5E-11	12	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-5	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGGKKRKIPM EKIQKKESRA VAFSQRRNGL YNKASQLCRL SGAEMAILTT PCSSSSHASF 60 YSFGHSSADG VVAAFLDDQR PVTVTDEENL GLGLWWEDDD LAESENPEEL KCAIESMSKM 120 LRNLKEVRLQ RDDQDDVKNN DIKKKDLVSH ETRNLDQTLN LKFTSATSGN VPRNFNKIAQ 180 EQDQIMAARN LDDGYTNQEL DLDQLIDFE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10006209m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284913.2	1e-155	agamous-like MADS-box protein AGL97
Swissprot	Q9C633	2e-49	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0F865	1e-154	R0F865_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006284913.1	1e-155	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46408.1	4e-31	AGAMOUS-like 97

Link Out ? help Back to Top
Phytozome	Carubv10006209m
Entrez Gene	17878201

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]