PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10006251m

Common Name

CARUB_v10006251mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 449aa MW: 49306.8 Da PI: 9.0674

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10006251m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.3	3.9e-14	368	417	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ + Carubv10006251m 368 RRQKRMIKNRESAARSRARKQAYTMELEAEIAQLKELNEELQKKQVEIME 417 69*************************************99876555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.4E-14	364	429	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	366	411	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.4E-12	368	424	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-10	368	420	No hit	No description
CDD	cd14707	1.89E-26	368	422	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-13	368	424	No hit	No description
PROSITE pattern	PS00036	0	371	386	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MGSRTDFKNF VDGLTDEAAI HPKQPMIGTT LPLTRQNSVF SLTFDEFQNS WGGGIGKDFG 60 SMNMDELLKN IWTAEESHSM MGNNASFNNI NNGNALINNN GGLSVGVGGE TGGGFLTGGS 120 LQRQGSLTLP RIISQKTVDD VWKELMKEDD VGNVVGNGGT SGIPQRQQTL GEMTLEEFLL 180 RAGVVREEPQ PVESVNNFNA GFYGFGNNAG LGTARNGIVA NQPHDLAGNG AVVRPDLLTT 240 QTQPLQMQQP QKVHQPQQLI QKQERPFPKQ TTIAFSNTVE AVNHSQPATQ FQEVKPSILG 300 MRDHHMNNNL LQAVDFKTGV TVAAVSPGSQ MSPDLTPKSA LDASLSPAPY MFGRVRKTGA 360 VLEKVIERRQ KRMIKNRESA ARSRARKQAY TMELEAEIAQ LKELNEELQK KQVEIMEKQK 420 NQLLEPLRQP WGMGCKRQCL RRTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MGSRTDFKNF VDGLTDEAAI HPKQPMIGTT LPLTRQNSVF SLTFDEFQNS WGGGIGKDFG  60
SMNMDELLKN IWTAEESHSM MGNNASFNNI NNGNALINNN GGLSVGVGGE TGGGFLTGGS  120
LQRQGSLTLP RIISQKTVDD VWKELMKEDD VGNVVGNGGT SGIPQRQQTL GEMTLEEFLL  180
RAGVVREEPQ PVESVNNFNA GFYGFGNNAG LGTARNGIVA NQPHDLAGNG AVVRPDLLTT  240
QTQPLQMQQP QKVHQPQQLI QKQERPFPKQ TTIAFSNTVE AVNHSQPATQ FQEVKPSILG  300
MRDHHMNNNL LQAVDFKTGV TVAAVSPGSQ MSPDLTPKSA LDASLSPAPY MFGRVRKTGA  360
VLEKVIERRQ KRMIKNRESA ARSRARKQAY TMELEAEIAQ LKELNEELQK KQVEIMEKQK  420
NQLLEPLRQP WGMGCKRQCL RRTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00038	PBM	Transfer from AT4G34000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10006251m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353408	0.0	AK353408.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-J01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284949.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
Refseq	XP_023635587.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
Refseq	XP_023635588.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
Swissprot	Q9M7Q3	0.0	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	R0F7H3	0.0	R0F7H3_9BRAS; Uncharacterized protein
STRING	XP_006284949.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	0.0	abscisic acid responsive elements-binding factor 3

Link Out ? help Back to Top
Phytozome	Carubv10006251m
Entrez Gene	17880286

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]