PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006284m
Common NameCARUB_v10006284mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 161aa    MW: 18483.1 Da    PI: 10.2509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006284mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-153075147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg WT+  d++l+++v+ +G ++W++I ++m+  Rt+k+c+ rw++ 
  Carubv10006284m 30 RGHWTQSQDLKLIELVEAYGLDNWDLIGEKMQ-ARTGKSCRFRWLNQ 75
                     899*****************************.***********996 PP
2Myb_DNA-binding52.21.4e-1684127348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T eE+++ v a++ +G++ W++Ia+++  gRt+ ++k++w+ ++
  Carubv10006284m  84 PFTVEEEKIMVSAHNFYGNK-WSKIAKHLK-GRTDIDVKNHWNVHM 127
                      89******************.********9.************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-122978IPR001005SANT/Myb domain
PROSITE profilePS5129412.2923076IPR017930Myb domain
PfamPF002495.9E-153075IPR001005SANT/Myb domain
SuperFamilySSF466893.79E-2830123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-223183IPR009057Homeodomain-like
CDDcd001671.50E-113374No hitNo description
PROSITE profilePS5129423.99177131IPR017930Myb domain
SMARTSM007171.1E-1381129IPR001005SANT/Myb domain
PfamPF002491.4E-1383126IPR001005SANT/Myb domain
CDDcd001672.27E-1084127No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2184130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
RPVNGVGANN ALSLRETQQE ERKSPYLGGR GHWTQSQDLK LIELVEAYGL DNWDLIGEKM  60
QARTGKSCRF RWLNQLDPTI NKAPFTVEEE KIMVSAHNFY GNKWSKIAKH LKGRTDIDVK  120
NHWNVHMNRT AWRSQTKTKK RCFTAALNPY GYHVPGMCLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30301297106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113KHLKGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006284m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284977.21e-116transcription factor MYB117
SwissprotQ9LQX52e-38MY117_ARATH; Transcription factor MYB117
TrEMBLR0GZW91e-118R0GZW9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006284977.11e-119(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.11e-53myb domain protein 89
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]