PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006405m
Common NameCARUB_v10006405mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 136aa    MW: 15879 Da    PI: 10.6656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006405mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-152063448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT  Ed +l ++v+  G+  W+ I + m+ gRt+k c+srw++yl
  Carubv10006405m 20 WTSLEDSKLRELVAVSGPQKWSHIGKQMQ-GRTGKTCRSRWFNYL 63
                     *****************************.**************7 PP
2Myb_DNA-binding39.81e-1269110144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++++ eE e+l++a+k+lG++ W++Ia+++  gRt+  +   +
  Carubv10006405m  69 KDAFSDEENEKLLKAHKELGNK-WSRIAKRFH-GRTDRAVHKQF 110
                      679*******************.*********.****9886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.6651267IPR017930Myb domain
SuperFamilySSF466894.21E-2515108IPR009057Homeodomain-like
SMARTSM007171.9E-101665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241970IPR009057Homeodomain-like
PfamPF002491.2E-132063IPR001005SANT/Myb domain
CDDcd001674.97E-92063No hitNo description
PROSITE profilePS5129413.04268118IPR017930Myb domain
SMARTSM007173.2E-1168116IPR001005SANT/Myb domain
PfamPF002491.5E-1069110IPR001005SANT/Myb domain
CDDcd001671.23E-671114No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1971119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
RPLNEVREEE KNKDRQSKLW TSLEDSKLRE LVAVSGPQKW SHIGKQMQGR TGKTCRSRWF  60
NYLDPKINKD AFSDEENEKL LKAHKELGNK WSRIAKRFHG RTDRAVHKQF DKLMRRELKK  120
PSSASPHDPN DKAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-28201187105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006405m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282491.22e-96transcription factor MYB105
SwissprotQ9SEZ41e-34MY105_ARATH; Transcription factor MYB105
TrEMBLR0GF622e-94R0GF62_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282491.13e-95(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.14e-43myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]