PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006407m
Common NameCARUB_v10006407mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 186aa    MW: 20702.4 Da    PI: 5.3082
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006407mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23e-295102199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+l+ +C++ C+  p+fp+++  +f+ vh++FGa+nvlk+l++l e ere+a+++l+y Aear rdPv+G++g+ l++++ l+ +++e+
  Carubv10006407m   5 RCAVCKILNVTCEPTCICKPHFPSNS-TRFQDVHQIFGAENVLKILNSLGEVEREIAANCLCYAAEARRRDPVSGVYGMKLHYESILNDVEQEI 97 
                      6**********************987.89***************************************************************99 PP

           DUF260  95 allke 99 
                      +++ +
  Carubv10006407m  98 KSALN 102
                      88755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.4884104IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-27599IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASNRCAVCK ILNVTCEPTC ICKPHFPSNS TRFQDVHQIF GAENVLKILN SLGEVEREIA  60
ANCLCYAAEA RRRDPVSGVY GMKLHYESIL NDVEQEIKSA LNELETNLGP DQVPKYFDIP  120
IPDDFLNTTA SLDSYIEKIK NLTTVEKNNL LQFWKRENQK MGDDHRVDGA STSAGPSTAL  180
GEKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1821048111LOB family transfactor Ramosa2.1
5ly0_B1e-1821048111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006407m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545910.0AC254591.1 Capsella rubella clone CAP08-M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282797.11e-138LOB domain-containing protein 32
SwissprotO496518e-71LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP61e-137R0GTP6_9BRAS; Uncharacterized protein
STRINGXP_006282797.11e-138(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.13e-73LOB domain-containing protein 32