PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006604m
Common NameCARUB_v10006604mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 270aa    MW: 30538.8 Da    PI: 9.0704
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006604mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57365.11.7e-2076165497
           DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                       +lw +eDe++lLqG+i +k+ t ++      +++y+f+k+sisfkvs +q + Ki   + K++kk +    gk+p  s ++d k+fel+k iW
  Carubv10006604m  76 PQLWRKEDELILLQGIIRCKTGTSTKFNPsVREKIYNFIKGSISFKVSLKQCTAKIHAVRSKYQKKLDS---GKKP--SGPQDLKAFELAKEIW 164
                      579****************999998777746789*******************************9999...6665..568888********** PP

           DUF573  97 g 97 
                      g
  Carubv10006604m 165 G 165
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-1877165IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVTKKISSEE EEEDSRETSS EEDEASSEDE EPTKEQTPSK AAEKAKGQKR VSERTSSQDM  60
SAAKKVKSSV KKSVPPQLWR KEDELILLQG IIRCKTGTST KFNPSVREKI YNFIKGSISF  120
KVSLKQCTAK IHAVRSKYQK KLDSGKKPSG PQDLKAFELA KEIWGLSGTS DAKESRKSEK  180
IQKLEEEKDV MIHEQGEDWF KNSILYRVVT ILGMEKDKVK SWSCVAKEKK KIMLDRWSDL  240
EAKDAEIVHQ KTAYVHDLIC VILEASPSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006604m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285244.10.0probable transcription factor At1g61730
TrEMBLR0F8A50.0R0F8A5_9BRAS; Uncharacterized protein
STRINGXP_006285244.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2048245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-26DNA-binding storekeeper protein-related transcriptional regulator