PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006793m
Common NameCARUB_v10006793mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 227aa    MW: 26406.6 Da    PI: 5.5111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006793mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73.1e-13950344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     +en+  r + f +R +g+lKK +EL +LCd+ +++iifs+++
  Carubv10006793m  9 VENNKARAIFFRRRSEGVLKKVKELTILCDILACLIIFSPND 50
                     699999*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004046.5E-6121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.11149IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-14158IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-18392IPR002100Transcription factor, MADS-box
CDDcd002663.27E-24382No hitNo description
PfamPF003191.5E-12950IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-62136IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-63657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVKVKLAWVE NNKARAIFFR RRSEGVLKKV KELTILCDIL ACLIIFSPND AEPMVWPSVE  60
TARGLLDNFF SLPKFEQKKR DACLESFLKE KINKVQEKLK KNQEKCKEYV IDQLMIQLQQ  120
GCRIDDFNLN EINELLSFSR DRIILGREML GSMQFSPLRD PPVLPFEVQV EQLAEKRDEA  180
TVLIELANND VRQEPPPNET FAREDHVDLS LLGIDKDWLK LNNYHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006793m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545730.0AC254573.1 Capsella rubella clone JGIBPHG-17A14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296244.16e-79agamous-like MADS-box protein AGL80
TrEMBLR0GX571e-163R0GX57_9BRAS; Uncharacterized protein
STRINGXP_006282850.11e-164(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.15e-63AGAMOUS-like 48