PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006881m
Common NameCARUB_v10006881mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 203aa    MW: 22131.3 Da    PI: 5.0164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006881mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-054668123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Carubv10006881m 46 YTCNFCRREFRSAQALGGHMNVH 68
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-64372No hitNo description
Gene3DG3DSA:3.30.160.608.9E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-54669IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNGGAWMWNP NKIEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRASSRAHQG HTAAAAARSN SGGTLLNPCA PTLPTLIIQS TSSNIEGLSH  120
FYQLQNPNGI FGNSGDMMNL YGTTSFPSSN HSFSVLNSPV EVPPRLIDYS TGDDESIGSM  180
KETTGTSVDE LDLELRLGHN PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006881m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615470.0AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankBT0108280.0BT010828.1 Arabidopsis thaliana At4g17810 mRNA, complete cds.
GenBankBT0113010.0BT011301.1 Arabidopsis thaliana At4g17810 gene, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankHM4533340.0HM453334.1 Arabidopsis lyrata palmate-like pentafoliata 1 transcription factor (PALM1) gene, complete cds.
GenBankZ973440.0Z97344.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285463.11e-151zinc finger protein 10 isoform X1
TrEMBLR0F9L31e-149R0F9L3_9BRAS; Uncharacterized protein
STRINGXP_006285463.11e-150(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-135C2H2 family protein