PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006921m
Common NameCARUB_v10006921mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 237aa    MW: 26705.3 Da    PI: 8.4325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006921mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-163278148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r+ WT  Ed +l ++v+++G++tW++Ia++++ gR++k c+ rw+ +l
  Carubv10006921m 32 RDFWTSSEDMKLRELVAEYGPRTWTKIAEKIQ-GRSAKTCRARWFRHL 78
                     678*****************************.***********9886 PP
2Myb_DNA-binding41.92.3e-1384128147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T  E+ +l+d+ +++G++ W++Ia++++ gRt++ +++ w  +
  Carubv10006921m  84 KKAFTDKEEAILLDGYAKHGNK-WTLIAKHLP-GRTDEAVVNNWTRL 128
                      679*******************.*********.********999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5112782IPR017930Myb domain
SMARTSM007173.1E-133180IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-2532125IPR009057Homeodomain-like
PfamPF002492.9E-153578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-233585IPR009057Homeodomain-like
CDDcd001671.29E-123578No hitNo description
SMARTSM007174.7E-1283131IPR001005SANT/Myb domain
PROSITE profilePS5129415.04783133IPR017930Myb domain
PfamPF002491.4E-1184127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-1886132IPR009057Homeodomain-like
CDDcd001674.51E-986129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKSPSNEVGE SNASLERMNR EEKNKEKVIS FRDFWTSSED MKLRELVAEY GPRTWTKIAE  60
KIQGRSAKTC RARWFRHLDP AISKKAFTDK EEAILLDGYA KHGNKWTLIA KHLPGRTDEA  120
VVNNWTRLMK KKNRKPKQSA SPLEVTTNVD TTEDSASELT DQAMQYSSAL HYGLPIMYAV  180
PLAMAAPHVS MAIFQPSSSS NAVDTMETEH IETKIPPKFI DFLGVEESVK VKEETA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-27351327104MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-273513230127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006921m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285492.21e-177transcription factor MYB56
TrEMBLR0H1961e-175R0H196_9BRAS; Uncharacterized protein
STRINGXP_006285492.11e-176(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2738433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.26e-40myb domain protein 110