PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006990m
Common NameCARUB_v10006990mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 141aa    MW: 15809.2 Da    PI: 10.4917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006990mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-153883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r+rWT+ Ed++l+++v+  G+ +Wk I  +m  g+t+k+c+ rw  y
  Carubv10006990m 38 RKRWTPSEDLQLKELVAVSGPQNWKQIGDKML-GKTGKSCRMRWVGY 83
                     89*****************************9.***********766 PP
2Myb_DNA-binding49.21.2e-1590135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++++T eEd +l+ + k++G++ W++Ia+ +  gRt+  +k++w+k++
  Carubv10006990m  90 KKAFTDEEDAILLACQKKMGNK-WSKIAKILS-GRTDTAVKNHWHKLM 135
                      679*******************.*********.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1733384IPR017930Myb domain
SuperFamilySSF466892.68E-2736131IPR009057Homeodomain-like
SMARTSM007177.5E-133786IPR001005SANT/Myb domain
PfamPF002492.6E-133884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-224091IPR009057Homeodomain-like
CDDcd001678.25E-114084No hitNo description
PROSITE profilePS5129425.96285139IPR017930Myb domain
SMARTSM007171.5E-1489137IPR001005SANT/Myb domain
PfamPF002499.0E-1390134IPR001005SANT/Myb domain
CDDcd001672.23E-1092135No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2092137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
TQVSQHILFD VALQGPASNG SGENDALMGV THEKKKERKR WTPSEDLQLK ELVAVSGPQN  60
WKQIGDKMLG KTGKSCRMRW VGYLDPNINK KAFTDEEDAI LLACQKKMGN KWSKIAKILS  120
GRTDTAVKNH WHKLMNRGKH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28411377103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006990m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285549.21e-100transcription factor MYB105
SwissprotQ6R0533e-38MYB56_ARATH; Transcription factor MYB56
TrEMBLR0F9311e-99R0F931_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006285549.11e-100(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.11e-49myb domain protein 89
Publications ? help Back to Top
  1. Chen L,Bernhardt A,Lee J,Hellmann H
    Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases.
    Mol Plant, 2015.
    [PMID:25343985]
  2. Frigola D,Caño-Delgado AI,Ibañes M
    Methods for Modeling Brassinosteroid-Mediated Signaling in Plant Development.
    Methods Mol. Biol., 2017. 1564: p. 103-120
    [PMID:28124249]
  3. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  4. Jeong CY, et al.
    AtMyb56 Regulates Anthocyanin Levels via the Modulation of AtGPT2 Expression in Response to Sucrose in Arabidopsis.
    Mol. Cells, 2018. 41(4): p. 351-361
    [PMID:29487277]