PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10006994m

Common Name

CARUB_v10006994mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 306aa MW: 35028.7 Da PI: 4.9987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10006994m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	5.8e-06	196	232	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L++l+ + +K + a++L AveYIk Lq Carubv10006994m 196 EKLGDRITALQQLVSPF-----GKTDTASVLHDAVEYIKFLQ 232 67789999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.22	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-11	192	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0043	193	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.06E-6	194	235	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-9	196	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTEEFETAGV CTGPWWSSSN NMFPGCYLPR STEIVIDNGI FEWQNIDTLD AKTYNENYLN 60 TSTFLGNENF DSTSQTYVSN QSNLHEEERF NPINSFLEGL FDLNEQVLVP NCPKPEAFDN 120 FHFFDDVFND SRMVSIFDHE SKNKPKDDMP ACKNLISCKR ASEKTEEHKD VESSQPLKRP 180 RLETPSHFPS FKFRKEKLGD RITALQQLVS PFGKTDTASV LHDAVEYIKF LQEQITEKVS 240 SDQHSRGSGE QQQWSDKSSN NTHQDQDCRP RQDLRSRGQI SCRSQVLSPP LLSIWTHLAS 300 GIRQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10006994m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285553.2	0.0	LOW QUALITY PROTEIN: transcription factor bHLH103
Swissprot	Q8VZ22	1e-161	BH103_ARATH; Transcription factor bHLH103
TrEMBL	G4WHA7	0.0	G4WHA7_9BRAS; Uncharacterized protein
STRING	XP_006285553.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	1e-152	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10006994m
Entrez Gene	17880266

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]