PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10006995m

Common Name

CARUB_v10006995mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 216aa MW: 23807.7 Da PI: 5.7017

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10006995m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.4	2.4e-25	56	118	17	78
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaess 78 gR RRvRl+++caar+++L++eLG+++d++t+eWLlqqa+p i+ +tg++ + ++ ++es Carubv10006995m 56 GRIRRVRLPVLCAARIYQLTKELGHKTDGETLEWLLQQAEPWIISATGNGIRPVGATtTTESV 118 799**********************************************55555333222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.471	46	101	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-20	57	119	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDSKTNPNLP SFLNLSPHNQ DTDKKRKQTE VKGFDFVVGD KELKRKKEEE QIQLLGRIRR 60 VRLPVLCAAR IYQLTKELGH KTDGETLEWL LQQAEPWIIS ATGNGIRPVG ATTTTESVVV 120 SRPLITADLM GCYHNTEGEA SRSQMAANGL WRNETGQNTT GGFDLNYGFG FDFNGVSEMG 180 FGNNQMPELE LGLSQDGNVG VLNPQVHQQM GQGQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	46	KRKQTEVKGFDFVVGDKELKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10006995m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023634344.1	1e-146	LOW QUALITY PROTEIN: transcription factor TCP6
Swissprot	Q9FLM6	1e-90	TCP6_ARATH; Transcription factor TCP6
TrEMBL	R0H4K5	1e-159	R0H4K5_9BRAS; Uncharacterized protein
STRING	XP_006285545.1	1e-159	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	5e-93	TCP family protein

Link Out ? help Back to Top
Phytozome	Carubv10006995m
Entrez Gene	17878045

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]