PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007111m
Common NameCARUB_v10007111mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 295aa    MW: 34635.6 Da    PI: 8.0314
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007111mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind67.33.4e-2113101197
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      +F++ +y++++d++ + +iswse+g+sf++++++ef +++ ++  F  +n+ SF   Ln+ gF+kv++e+         weF++++F +g+ +l
  Carubv10007111m  13 SFITTTYDMVDDSSSDLIISWSESGKSFIIWNPDEFYNNLFQRfCFTDNNLISFFSSLNKHGFEKVDSEK---------WEFANDNFVRGQPHL 97 
                      59************************************9999967**********************999.........*************** PP

                      XXXX CS
     HSF_DNA-bind  94 leki 97 
                      +++i
  Carubv10007111m  98 IKNI 101
                      **98 PP
2HSF_DNA-bind58.81.5e-181492412103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F +k+ye+++d++ + +iswse+g+sf++++++ef k++L ++     +  F  +L+ +gF+k++ +          weF++++F +++ +l+e
  Carubv10007111m 149 FPTKIYEMVDDPSSDGIISWSESGKSFIIWNPQEFYKDLLRRFTIPLPIFIFFCKLESFGFRKINPDM---------WEFANDNFVQNQPQLIE 233
                      899*************************************99999999****************9987.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i rk+ e
  Carubv10007111m 234 NIIRKHVE 241
                      ****9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-25699IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-2210101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-3510104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-2014101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.05E-23145238IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-29145238IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-22146238IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-18149238IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-7149172IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-7200212IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNANEGSSTS ISSFITTTYD MVDDSSSDLI ISWSESGKSF IIWNPDEFYN NLFQRFCFTD  60
NNLISFFSSL NKHGFEKVDS EKWEFANDNF VRGQPHLIKN IINYIIEQNV LVQQRSDMLN  120
MEKIFKQQVK GVKYQLPPYK RNPSSKLPFP TKIYEMVDDP SSDGIISWSE SGKSFIIWNP  180
QEFYKDLLRR FTIPLPIFIF FCKLESFGFR KINPDMWEFA NDNFVQNQPQ LIENIIRKHV  240
EKMDQQGKDY ARKKNVREAG DLFKLQVEEM VDMRKKMRKL PKEVKGQEVG LCKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007111m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285655.10.0heat stress transcription factor A-4a
SwissprotQ6VBB22e-26HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLR0H4X10.0R0H4X1_9BRAS; Uncharacterized protein
STRINGXP_006285655.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2017156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-110HSF family protein
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]