PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10007333m

Common Name

CARUB_v10007333mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HSF

Protein Properties

Length: 204aa MW: 23950.3 Da PI: 6.2985

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10007333m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	45.9	1.6e-14	17	105	1	101
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 +F++klye+++d+++++lisw ng++++++++ + +++ p+y +nf F+ YgF++v+++++ e++ + F kg+ ell Carubv10007333m 17 EFVTKLYELVDDPSTDSLISWGPNGDTIIISNPLKCCRDIFPQYLGVRNFMRFL----QYGFEMVEESRQ--------LEYACDDFVKGQPELL 98 6******************************************999977776....5******996........5999999999999999 PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 +ki ++ Carubv10007333m 99 DKIGQRY 105 9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.5E-17	11	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.9E-16	14	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	9.0E-15	14	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.6E-14	18	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-6	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-6	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MADRGVHVTR RGNRCLEFVT KLYELVDDPS TDSLISWGPN GDTIIISNPL KCCRDIFPQY 60 LGVRNFMRFL QYGFEMVEES RQLEYACDDF VKGQPELLDK IGQRYKDLQY ENFGKHSEAR 120 LKRLRSCKTE KERESLTKEN LKGYEVEMRA KMDQLLSKDV ERLMQTVAYE REWRRKALPE 180 HLEERLQLVL DSLNELTKAS SDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10007333m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285852.1	1e-150	heat stress transcription factor A-4b isoform X1
TrEMBL	R0H257	1e-148	R0H257_9BRAS; Uncharacterized protein
STRING	XP_006285852.1	1e-149	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14212	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-18	heat shock transcription factor C1

Link Out ? help Back to Top
Phytozome	Carubv10007333m
Entrez Gene	17878527